Interactive teaching

I’m currently taking a seminar on teaching college science. So far it’s been interesting– lots of discussion on what kind of information is retained by students, and the principles of backwards design, etc.

One of the assignments in the class is to observe a lecture incorporating ‘interactive learning’– which in other circles is referred to as flipping the classroom.

I believe the catch phrase is that students learn better from a ‘guide by the side’ than they do from a ‘sage on the stage’– the more active they are about using information in class, the better they learn the material. If they’re listening to a lecture, they might be tuned out for (optimistically) 10/50 minutes, If they’re doing an activity in class, they’re present for the whole period.

At Glass Town University, we have nearly 50,000 students– introductory science classes have 100-300 students. Incorporating in-class activities in a lecture of that size is not trivial. Last semester was the first time the intro bio courses made a concerted effort to introduce active learning (other than the use of clicker quizzes)– I was one of the first generation of TAs recruited to assist with this. There were half a dozen lectures where the students, in groups of three, would construct a ‘model’– a drawing of a specific biological process. It was interesting, and many students found it helpful for their understanding. A few overtly hated the whole concept (one student described it as ‘hellacious’). However, in a class of 300, anything other than ‘total disaster’ probably counts as a major victory.

Some issues:

–There’s a lot of material to cover in intro bio. When learned it as high-school AP biology (ten years ago…) we met for two hours a day, five days a week. Meanwhile, the college version only meets for 1.5 hours, three times a week. The lost lecture time is precious.

-Even with an army of TAs to assist and grade, a lot of submitted models were wrong in very weird ways. We frequently ended up using such a lax rubric that basic biological errors weren’t marked off. Having students spend an hour actively learning incorrect concepts seems like the worst possible outcome.

-Students usually did internalize the core concepts of a modeling activity, but sometimes at the expense of other information. For example, the key concept of one activity was that the shape of a protein determines its function. On the exams, some students tried to use ‘structure –> function’ as the answer to EVERY short answer question. This was incredibly frustrating to grade, and worrisome with regards to overall comprehension.

Issues notwithstanding, it’s supposed to be objectively a better way to teach science– difficult to implement, but worth the effort.

Regardless of my experiences last semester, I’m still supposed to sit in on a different class for my seminar course. This morning I crashed an introductory science course for non-majors. They weren’t doing a flipped lecture today, but the professor still made a substantial effort to keep students engaged. He was discussing the importance of experimental validation, and the power of confirmation bias. During the lecture, he played several variations of the classic ‘moon walking bear’ video, showed pictures of clouds that look like UFOs, gave a pop quiz where students were allowed to work with their neighbors. The students seemed reasonably engaged, but many many people were still on their computers, or phones. He was doing everything right— I’m not sure how he could have made it more interesting (“this will be on the test”?)

I introduced myself to the professor after class, and he was genial and good-natured about my lecture-crashing. Unexpectedly, he asked me about my research questions and career goals, which I wasn’t expecting in that context. I’m not sure what kind of impression I made, since I’m so tired that immediately afterward I tried to have a conversation with a vending machine. You have to give me my money back now…ok, thank you.

I have a lot more to say about interactive learning activities, and their applications, but I should probably come back to this subject when I’m less sleep-deprived.

IHOP, we have to stop meeting like this

quantitativeimagining is trapped in purgatory jury duty, so it seems I’ve primarily got myself to talk to this week. This might make a great opportunity to get back to semi-anonymous whining blogging.

I may have made a mistake when I planned my schedule for this semester.

As a graduate student, my funding (stipend + tuition) for the last few years has principally come from teaching-assistantships. The theory is you have a ‘half-time’ teaching position (~20 hours of work a week), which pays the bills, and leaves ‘half-time’ (~20 additional hours) for research. I’ve been intending to TA an intro biology lab for a while, and this semester finally got the opportunity. However, one of the intro-biology lecture professors requested me specifically as a TA, and I’m a sucker for that kind of flattery, so I’m splitting my time. Theoretically I’m 1/4 time (10 hours) for the lecture, and 1/4 time for the biology lab. In reality, I have more responsibilities for the lecture than I did last semester, when I was 1/2 time for that position, and TA work is consuming close to 30 hours a week. It also has been more stressful and less fun than some of my previous teaching experiences– lots of circumstances outside of my control (people not communicating with me, technological quirks) that have been setting me up to look stupid and incompetent.

This schedule also leaves 10-20 hours for research, about 5-10 of which gets sucked into my own class/meetings/chores/etc. I end up having maybe one to two afternoons during the standard work-week to actually devote to research, which puts a fair amount of pressure on me to be productive on evenings/weekends. As it happens, I’m not someone who works well under that kind of pressure. Have I mentioned that I’m in the fifth year of my PhD, and research progress this semester is non-optional? I haven’t been able to sleep on Sunday nights since the first week of the semester. All-nighters and I are old acquaintances– we go way back, but I’m twenty-six and I’m starting to feel a little weird about this lifestyle.

These are all purely first-world problems, causing only minor frustration. It’s also absolutely a situation I created for myself, eyes open. I should still have enough time to accomplish all that I need, especially if I stop psyching myself out.

Another insomniac night at the IHOP

I’m at the diner at 4am (once again) making some pancake-fueled progress.

Unfortunately, it’s been mostly on brainless file manipulation. Still, it was something that needed to get done.

I have a co-meeting with both Senior-Adviser and Adviser-Prime tomorrow morning, which is somewhat exciting. We haven’t had a group meeting in probably about six months (maybe more?). Since Adviser-Prime is moving to the frozen wasteland of Gondal at the end of the year, it might not happen again until my next committee meeting.

Visiting scientists

Today I had the opportunity to sit in on a meeting between Senior-Adviser and a visiting speaker. I’ve been looking forward to this speaker for some months– I’ve got an entire folder devoted to articles from his lab on my computer. His questions are similar to mine, but in a different model system. Anyway, the conversation was completely fascinating! I could have been a happy fly (pun intended) on the wall in that room for hours. Unfortunately I never managed to participate. It moved a little too quickly, and segued in a direction where I had little to contribute. Hopefully the speaker didn’t make any comments on my total silence when he met with Adviser-Prime later in the afternoon (in the past, people have asked Adviser-Prime if I’m autistic.)

I mostly interact with Senior-Adviser at the level of day-to-day methods, so it can be easy to forget his amazing  perspective on the intersections of evolutionary and molecular biology.

I’ve had some very good interactions with visiting scientists in the past- they don’t always end in awkward silence. It’s always slightly bittersweet. I’m almost 100% sure I’m leaving research when (if) I finish the PhD. I’ve got less then two years left, and I know I’ll miss the sense of being on the cutting edge, and the privilege of meeting luminaries in the field. I realize ‘luminaries’ is a bit pretentious, but it’s difficult to think of a better term for people whose labs are metaphorically defining the current face of evolutionary and molecular biology.

The speaker’s actual talk was also quite good, and covered an amazing amount of ground. It wasn’t what I expected– he’s breaking into some different model systems, with enormous potential implications. He was also a very practiced, accomplished speaker. Some scientists do important and interesting work that they can’t effectively communicate– definitely not the case here. I’ll probably blog more about that in a future post.

Funniest moment was when he was talking about a high risk experiment that required “$60-70,000 in transgenics”, and Adviser-Prime audibly whispered “holy shit!” The speaker agreed that if these experiments hadn’t produced a useable result, it would have been a “very sad day”. Between the two of them, it got a pretty good laugh.

The spooky grad-student hell dream

I few months ago I saw a production of “The Book of Mormon”– the musical written by the creators of South Park. I didn’t really like the (ethnocentric and racist) storyline, but some of the songs were catchy and fun. One of these was “The Spooky Mormon Hell Dream”, link here: http://www.youtube.com/watch?v=hNEh4bm6rNQ

It’s Hell for Mormon-specific minor sins (it features dancing coffee).

I waste a fair amount of mental energy feeling guilty for grad-student sins.

Things I’ve felt guilty about over the last week:

-losing productivity in late afternoon

-not getting to lab until 11:30am (after staying in lab until 3am the night before)

-working on projects that should have been complete several months ago

-outlining a NaNoWriMo novel during office hours

-doing homework the same day it’s due

-gchat and other internet while in lab

-not working on the weekend

-not being conscientious about lab chores

-complaining about my advisers

-not paying attention during talks

-not appreciating graduate school

-being more excited about books/fun than science/work

and last but not least…

-blogging in lab 🙂

Forgive me Science, for I have sinned…

I’m always working on being a better student, and not all weeks are as bad as last week. Still, it’s unusual to go more than a week or so without some failures, and the resulting disproportionate guilt. Graduate Student Hell probably includes angry committee members, rancid seminar coffee, dead specimens, and eventual unemployment. Hopefully that stays a spooky dream, and doesn’t become reality.

Journal Clubs

Journal clubs are something I expected to love, but mostly hate. In college, I participated in informal journal clubs as part of lab meetings. Some upper-level classes would also include discussion of relevant papers. This was usually lots of fun. I always felt comfortable participating, and energized by the discussion.

As a graduate student, I’ve participated in a handful of journal clubs as part of seminar courses, and they’re completely different. One student presents the paper, usually with a power point accompaniment. Faculty members may quiz the student, and occasionally one or two graduate students doing related research will jump in. Most students sit quietly, and wait for it to be over. Sometimes it’s still interesting, but they never reach majority participation.

I wonder about what factors contribute to this.

The journal clubs I participate in these days are much more molecular biology and biochemistry oriented than the articles I was reading as a college student. I’m frequently unfamiliar with at least some, if not all of the techniques used in an article. This can make it difficult to engage with the paper deeply enough to provide real critique. It’s possible this is true for other students as well. With the more organismal/behavioral papers I was reading as a college student, even if you were unfamiliar with the specific methods, it was relatively easy to understand the experimental logic.

Another difference is the level of faculty participation. One of the journal clubs I attend has multiple faculty members in regular attendance, whereas in a classroom setting, or in a lab meeting, there’s only one PI. That may leave more room for students to jump in. However, I don’t think this is the issue. The seminar courses mostly have only one professor, and lab meetings in Senior-Adviser’s lab regularly incorporate article discussions, and they’re all equally lacking in spirit.

The only really successful journal club I’ve attended in graduate school was in Adviser-Prime’s lab, while AP was on sabbatical. We called it ‘fake journal club’. Since AP wasn’t around, we figured it was a good excuse to spend Wednesday afternoons at a bar. However, we did take it seriously, and worked through several fairly difficult, math-intensive classic papers. It was much closer to the fun, discussion oriented experience I remember from my undergrad. However, the total lack of faculty involvement/guidance did lead to eventual deterioration and dissolution.

I suspect a large part of the problem is that most of the journal clubs I’ve attended in graduate school allow students to choose the paper they ‘present’. These papers are usually very recent. When faculty choose papers, include older, classic papers, they’re more likely to be pertinent to more people. Fake Journal Club focused on classic papers, so everyone had a vested interest in reading and understanding the content.

I think the secret recipe might be:

-faculty participation, but not too much faculty participation

-the journal article needs to be (for one reason or another) interesting to a majority of the group

-everyone needs to have read the article

-important papers should be given precedence over recent paper

-a culture of participation

The last factor is probably the most important, for all that it’s a catch-22. If people participate, people are more likely to participate.

I may have just written myself into another new years resolution.

So much for a regular blogging schedule!

Shanah Tovah, everyone, a few weeks late.

For a couple weeks I was very busy, and then I fell out of the habit.

I’ve also written a second short story, and read…way too many books. It’s funny– I used to work so hard as a graduate student. I had to instill personal boundaries like “no bench work after midnight”, and “if you need to be in by 8am, make sure you’re out by 8pm”, because otherwise that sort of thing happened all the time. These days I have my books, my creative writing, my pets, and a few other hobbies lurking in the background. I sleep every night, I shower every day, and I’m a lot happier. It feels a little like cheating. I have the sense that if I’m not miserable in graduate school, I’m probably not working hard enough.

However, I finally finished Mistborn: The Final Empire. In the space of a couple days, I also read the two sequels. Brandon Sanderson is probably the top name in the epic fantasy genre these days (excluding George R. R. Martin, of course). This Penny Arcade comic isn’t entirely wrong: http://www.penny-arcade.com/comic/2013/09/30/sanderfuge

His prose is decent, his characterization is not extremely convincing, and large parts of his books get redundant and long winded. By the end of the trilogy, I’d find myself skipping pages at a time, because they were covering old (or annoying) ground.

That said, he can *nail* an ending! Any complaints I had about writing quality consistently disappeared in the last hundred pages of his books. They were all fast paced, surprising, and for lack of a better word, awesome. After finishing the Final Empire, and book 2 “Mistborn: The Well of Ascension”, I was ready to take back anything negative I’d ever said or thought about his writing. They more than make up for other weaknesses.

Pizza/work nights

A semester ago, when I was in the process of switching thesis projects, I managed to sustain a high level of productivity over several months using ‘pizza/work nights’. I was based in Adviser-Prime’s lab space at the time, which has a reasonably comfortable office-couch. I’d bring a change of clothes to work, and take an early-evening nap in the office. When I woke up  between 8-11pm, I’d buy a pizza and commit to a long night of getting things done. I’d usually grab a few extra hours of sleep in the early morning, between 5-8am, before starting the ‘real’ workday. I would do this two or three times a week.

It was great! It added about 4-6 hours of productive time to my day. I’m easily distracted, and the big, un-interupted blocks of time were incredibly valuable. I’d queue up the complicated tasks I was dreading, and the next morning would have made real progress.

It also made work feel fun. Successful pizza-nights weren’t last-minute high-pressure all-nighters, they were entirely voluntary and rewarded by pizza.

Obviously there were downsides. Living out of the office would be completely impossible for anyone with a family, or people at home. It also wasn’t great for my sleep schedule, and I gained over five kilograms in three months from the pizza. I’m a fairly small person, five kg was not trivial. However, a few extra pounds seemed like nothing compared to the possibility of actually graduating someday (maybe even on time!).

I haven’t been able to replicate the phenomenon successfully in about six months. I’ve tried a few times (most recently last night), but my circadian rhythm isn’t currently set up for early evening naps. Without the nap, I eat a bunch of pizza, get very little done, and fall asleep for the whole night.

It was wonderful while it lasted.

Soylent Revolution!

As my friend q-i described here: http://quantitativeimagining.wordpress.com/2014/08/15/using-human-kibble-to-do-n-of-1-science/, I’ve been mixing up a DIY version of soylent for a few weeks.

Soylent is of course the crowd-funded powdered-food-replacement sensation that would be sweeping the nation if it could stick to its planned shipping schedule. Apart from the name and the general concept, it has nothing to do with ‘Soylent Green’. It’s not made out of soy, lentils, or people.

Ars Technica did a very amusing review of the concept here: http://arstechnica.com/series/ars-does-soylent/

I’m terrible about packing lunch, and always end up eating overpriced coffee-shop food or taco-bell, so I’ve been enthusiastic about a cheap and nutritious food replacement since I first heard about the project.

While I’m waiting for the ‘real’ soylent to start shipping, I’m mixing a knock-off version for myself.  I’m using a personalized variant of one of the easy standard recipes, which includes masa harina, a few vitamin and mineral powders, protein powder, and vegetable oil. It’s not unlike mixing up Luria-Burtani broth for a batch of E.coli, and vastly easier than cooking.

It’s wonderfully efficient, and almost certainly healthier than my regular diet of protein bars, yogurt, and potato chips.
When it’s flavored with stevia and cinnamon, it tastes a lot like a grittier horchata milkshake.

The only downside is the disturbed looks I get when people see me mixing up ambiguous powder and crisco at lunchtime.